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» Models and Methods in Comparative Genomics
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KRDB
2003
117views Database» more  KRDB 2003»
14 years 11 days ago
On a Unifying Framework for Comparing Knowledge Representation Schemes
Given the numerous knowledge representation models (KR-schemes) that have been proposed, it would be desirable to have a formal, unifying model for the description of a KR-scheme,...
Giorgos Flouris, Dimitris Plexousakis, Grigoris An...
BMCBI
2005
104views more  BMCBI 2005»
13 years 11 months ago
A statistical approach for array CGH data analysis
Background: Microarray-CGH experiments are used to detect and map chromosomal imbalances, by hybridizing targets of genomic DNA from a test and a reference sample to sequences imm...
Franck Picard, Stéphane Robin, Marc Laviell...
BICOB
2009
Springer
14 years 5 months ago
Assembly of Large Genomes from Paired Short Reads
The de novo assembly of genomes from high-throughput short reads is an active area of research. Several promising methods have been recently developed, with applicability mainly re...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...
SIGMOD
2011
ACM
150views Database» more  SIGMOD 2011»
13 years 1 months ago
WHAM: a high-throughput sequence alignment method
Over the last decade the cost of producing genomic sequences has dropped dramatically due to the current so called “next-gen” sequencing methods. However, these next-gen seque...
Yinan Li, Allison Terrell, Jignesh M. Patel
BMCBI
2011
13 years 6 months ago
Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in i
Background: In the last decades, microarray technology has spread, leading to a dramatic increase of publicly available datasets. The first statistical tools developed were focuse...
Paolo G. V. Martini, Davide Risso, Gabriele Sales,...