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» Models and Methods in Comparative Genomics
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TREC
2007
14 years 9 days ago
WIM at TREC 2007
This paper introduced the four tracks that WIM-Lab Fudan University had taken part in at TREC 2007. For spam track, a multi-centre model was proposed considering the characteristi...
Jun Xu, Jing Yao, Jiaqian Zheng, Qi Sun, Junyu Niu
BMCBI
2008
101views more  BMCBI 2008»
13 years 11 months ago
Reranking candidate gene models with cross-species comparison for improved gene prediction
Background: Most gene finders score candidate gene models with state-based methods, typically HMMs, by combining local properties (coding potential, splice donor and acceptor patt...
Qian Liu, Koby Crammer, Fernando C. N. Pereira, Da...
BMCBI
2010
125views more  BMCBI 2010»
13 years 11 months ago
Haplotype allelic classes for detecting ongoing positive selection
Background: Natural selection eliminates detrimental and favors advantageous phenotypes. This process leaves characteristic signatures in underlying genomic segments that can be r...
Julie Hussin, Philippe Nadeau, Jean-Françoi...
ISMB
1997
14 years 15 days ago
Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags
Abstract.) Ying Xu, Richard J. MuraF, and Edward C. Uberbacher Computer Science and Mathematics Division and tLife Sciences Division Computational methods for gene identification ...
Ying Xu, Richard J. Mural, Edward C. Uberbacher
BMCBI
2005
131views more  BMCBI 2005»
13 years 11 months ago
Functional annotation by identification of local surface similarities: a novel tool for structural genomics
Background: Protein function is often dependent on subsets of solvent-exposed residues that may exist in a similar three-dimensional configuration in non homologous proteins thus ...
Fabrizio Ferrè, Gabriele Ausiello, Andreas ...