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» Models and Methods in Comparative Genomics
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124
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PPDP
2000
Springer
15 years 6 months ago
A model for comparing the space usage of lazy evaluators
Identifying the source of space faults in functional programs is hard. The problem is compoundedas space usage can vary enormously from one implementation to another. We use a ter...
Adam Bakewell, Colin Runciman
121
Voted
BMCBI
2010
136views more  BMCBI 2010»
15 years 2 months ago
An integrated Bayesian analysis of LOH and copy number data
Background: Cancer and other disorders are due to genomic lesions. SNP-microarrays are able to measure simultaneously both genotype and copy number (CN) at several Single Nucleoti...
Paola M. V. Rancoita, Marcus Hutter, Francesco Ber...
134
Voted
BMCBI
2008
146views more  BMCBI 2008»
15 years 2 months ago
nGASP - the nematode genome annotation assessment project
Background: While the C. elegans genome is extensively annotated, relatively little information is available for other Caenorhabditis species. The nematode genome annotation asses...
Avril Coghlan, Tristan J. Fiedler, Sheldon J. McKa...
135
Voted
TREC
2003
15 years 4 months ago
Knowledge-Based Access to the Bio-Medical Literature, Ontologically-Grounded Experiments for the TREC 2003 Genomics Track
The Tarragon Consulting team participated in the primary task of the TREC 2003 Genomics Track. We used a combination of knowledge-engineering and corpus analysis to construct sema...
Richard Tong, John Quackenbush, Mark Snuffin
127
Voted
BMCBI
2010
148views more  BMCBI 2010»
15 years 2 months ago
Calling SNPs without a reference sequence
Background: The most common application for the next-generation sequencing technologies is resequencing, where short reads from the genome of an individual are aligned to a refere...
Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan...