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» Models and Methods in Comparative Genomics
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JCB
2008
170views more  JCB 2008»
13 years 9 months ago
Efficiently Identifying Max-Gap Clusters in Pairwise Genome Comparison
The spatial clustering of genes across different genomes has been used to study important problems in comparative genomics, from identification of operons to detection of homologo...
Xu Ling, Xin He, Dong Xin, Jiawei Han
BMCBI
2006
120views more  BMCBI 2006»
13 years 10 months ago
A factor analysis model for functional genomics
Background: Expression array data are used to predict biological functions of uncharacterized genes by comparing their expression profiles to those of characterized genes. While b...
Rafal Kustra, Romy Shioda, Mu Zhu
NAR
2007
210views more  NAR 2007»
13 years 9 months ago
MIPSPlantsDB - plant database resource for integrative and comparative plant genome research
Genome-oriented plant research delivers rapidly increasing amount of plant genome data. Comprehensive and structured information resources are required to structure and communicat...
Manuel Spannagl, Octave Noubibou, Dirk Haase, Li Y...
WABI
2010
Springer
160views Bioinformatics» more  WABI 2010»
13 years 8 months ago
Genomic Distance with DCJ and Indels
The double cut and join (DCJ) operation, introduced by Yancopoulos, Attie and Friedberg in 2005, allows one to represent most rearrangement events in genomes. However, a DCJ cannot...
Marília D. V. Braga, Eyla Willing, Jens Sto...
RECOMB
2005
Springer
14 years 10 months ago
Stability of Rearrangement Measures in the Comparison of Genome Sequences
We present data-analytic and statistical tools for studying rates of rearrangement of whole genomes and to assess the stability of these methods with changes in the level of resol...
David Sankoff, Matthew Mazowita