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GRID
2007
Springer
14 years 1 months ago
Integrating multi-level molecular simulations across heterogeneous resources
— Biomolecular simulations play a key role in the study of complex biological processes at microscopic levels in which macromolecules such as proteins are involved. The simulatio...
Yudong Sun, Steve McKeever, Kia Balali-Mood, Mark ...
ICPP
2006
IEEE
14 years 1 months ago
Scalable Time-Parallelization of Molecular Dynamics Simulations in Nano Mechanics
— Molecular Dynamics (MD) is an important atomistic simulation technique, with widespread use in computational chemistry, biology, and materials. An important limitation of MD is...
Yanan Yu, Ashok Srinivasan, Namas Chandra
RSP
1999
IEEE
128views Control Systems» more  RSP 1999»
14 years 11 hour ago
3-D Floorplanning: Simulated Annealing and Greedy Placement Methods for Reconfigurable Computing Systems
The advances in the programmable hardware has lead to new architectures where the hardware can be dynamically adapted to the application to gain better performance. There are stil...
Kia Bazargan, Ryan Kastner, Majid Sarrafzadeh
IPPS
2008
IEEE
14 years 2 months ago
Impact of multicores on large-scale molecular dynamics simulations
Processing nodes of the Cray XT and IBM Blue Gene Massively Parallel Processing (MPP) systems are composed of multiple execution units, sharing memory and network subsystems. Thes...
Sadaf R. Alam, Pratul K. Agarwal, Scott S. Hampton...
BICOB
2009
Springer
14 years 2 months ago
Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors
Atomistic molecular dynamics (MD) simulations are a vital tool in chemical research, as they are able to provide a view of chemical systems and processes that is not obtainable thr...
Joseph E. Davis, Adnan Ozsoy, Sandeep Patel, Miche...