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IFIP
2004
Springer
14 years 1 months ago
Efficient Algorithms for Handling Molecular Weighted Sequences
Abstract In this paper we introduce the Weighted Suffix Tree, an efficient data structure for computing string regularities in weighted sequences of molecular data. Molecular Wei...
Costas S. Iliopoulos, Christos Makris, Yannis Pana...
CORR
2011
Springer
231views Education» more  CORR 2011»
12 years 12 months ago
Capacity of Discrete Molecular Diffusion Channels
Abstract—In diffusion-based molecular communications, messages can be conveyed via the variation in the concentration of molecules in the medium. In this paper, we intend to anal...
Arash Einolghozati, Mohsen Sardari, Ahmad Beirami,...
CCCG
2009
13 years 9 months ago
Defining and computing accessibility radius
In structural molecular biology software, the accessibility of an atom in a molecule to a ball representing solvent is either computed slowly by building a solventaccessible surfa...
Vishal Verma, Jack Snoeyink
DNA
2007
Springer
107views Bioinformatics» more  DNA 2007»
14 years 2 months ago
Autonomous Programmable Nanorobotic Devices Using DNAzymes
Abstract. A major challenge in nanoscience is the design of synthetic molecular devices that run autonomously and are programmable. DNA-based synthetic molecular devices have the a...
John H. Reif, Sudheer Sahu
FCCM
2005
IEEE
96views VLSI» more  FCCM 2005»
14 years 2 months ago
Preliminary Report: FPGA Acceleration of Molecular Dynamics Computations
Abstract: Molecular Dynamics (MD) is of central importance to computational chemistry and its myriad applications. Here we show that, at even a preliminary stage of development, MD...
Yongfeng Gu, Tom Van Court, Douglas DiSabello, Mar...