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CORR
2008
Springer
77views Education» more  CORR 2008»
13 years 7 months ago
Programming an interpreter using molecular dynamics
PGA (ProGram Algebra) is an algebra of programs which concerns programs in their simplest form: sequences of instructions. Molecular dynamics is a simple model of computation deve...
Jan A. Bergstra, C. A. Middelburg
JCC
2010
105views more  JCC 2010»
13 years 6 months ago
Fast determination of the optimal rotational matrix for macromolecular superpositions
: Finding the rotational matrix that minimizes the sum of squared deviations between two vectors is an important problem in bioinformatics and crystallography. Traditional algorith...
Pu Liu, Dimitris K. Agrafiotis, Douglas L. Theobal...
EGC
2005
Springer
14 years 1 months ago
OpenMolGRID: Using Automated Workflows in GRID Computing Environment
Quantitative Structure Activity/Property Relationship (QSAR/QSPR) model development is a complex and time-consuming procedure involving data gathering and preparation. It plays an ...
Sulev Sild, Uko Maran, Mathilde Romberg, Bernd Sch...
IFIP
2004
Springer
14 years 1 months ago
Efficient Algorithms for Handling Molecular Weighted Sequences
Abstract In this paper we introduce the Weighted Suffix Tree, an efficient data structure for computing string regularities in weighted sequences of molecular data. Molecular Wei...
Costas S. Iliopoulos, Christos Makris, Yannis Pana...
EUROPAR
2007
Springer
14 years 1 months ago
SymGrid: A Framework for Symbolic Computation on the Grid
This paper introduces the design of SymGrid, a new Grid framework that will, for the first time, allow multiple invocations of symbolic computing applications to interact via the ...
Kevin Hammond, Abdallah Al Zain, Gene Cooperman, D...