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GECCO
2005
Springer
124views Optimization» more  GECCO 2005»
14 years 1 months ago
The evolutionary computation approach to motif discovery in biological sequences
Finding motifs — patterns of conserved residues — within nucleotide and protein sequences is a key part of understanding function and regulation within biological systems. Thi...
Michael A. Lones, Andrew M. Tyrrell
BMCBI
2006
103views more  BMCBI 2006»
13 years 7 months ago
Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequili
Background: The discovery of cis-regulatory motifs still remains a challenging task even though the number of sequenced genomes is constantly growing. Computational analyses using...
Kenneth W. Berendzen, Kurt Stüber, Klaus Hart...
CORR
2010
Springer
85views Education» more  CORR 2010»
13 years 7 months ago
The Motif Tracking Algorithm
: The search for patterns or motifs in data represents a problem area of key interest to finance and economic researchers. In this paper we introduce the Motif Tracking Algorithm, ...
William O. Wilson, Phil Birkin, Uwe Aickelin
KDD
2003
ACM
146views Data Mining» more  KDD 2003»
14 years 8 months ago
Probabilistic discovery of time series motifs
Several important time series data mining problems reduce to the core task of finding approximately repeated subsequences in a longer time series. In an earlier work, we formalize...
Bill Yuan-chi Chiu, Eamonn J. Keogh, Stefano Lonar...
TCBB
2010
98views more  TCBB 2010»
13 years 2 months ago
VARUN: Discovering Extensible Motifs under Saturation Constraints
Abstract-The discovery of motifs in biosequences is frequently torn between the rigidity of the model on the one hand and the abundance of candidates on the other. In particular, m...
Alberto Apostolico, Matteo Comin, Laxmi Parida