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RECOMB
2002
Springer
14 years 10 months ago
Monotony of surprise and large-scale quest for unusual words
The problem of characterizing and detecting recurrent sequence patterns such as substrings or motifs and related associations or rules is variously pursued in order to compress da...
Alberto Apostolico, Mary Ellen Bock, Stefano Lonar...
COMPLEX
2009
Springer
14 years 4 months ago
Transforming Time Series into Complex Networks
We introduce transformations from time series data to the domain of complex networks which allow us to characterise the dynamics underlying the time series in terms of topological ...
Michael Small, Jie Zhang, Xiaoke Xu
RECOMB
1999
Springer
14 years 2 months ago
Classifying proteins by family using the product of correlated p-values
An important goal in bioinformatics is determining the homology and function of proteins from their sequences. Pairwise sequence similarity algorithms are often employed for this ...
Timothy L. Bailey, William Noble Grundy
BIODATAMINING
2008
130views more  BIODATAMINING 2008»
13 years 10 months ago
Uncovering mechanisms of transcriptional regulations by systematic mining of cis regulatory elements with gene expression profil
Background: Contrary to the traditional biology approach, where the expression patterns of a handful of genes are studied at a time, microarray experiments enable biologists to st...
Qicheng Ma, Gung-Wei Chirn, Joseph D. Szustakowski...
BMCBI
2010
115views more  BMCBI 2010»
13 years 10 months ago
Importance of replication in analyzing time-series gene expression data: Corticosteroid dynamics and circadian patterns in rat l
Background: Microarray technology is a powerful and widely accepted experimental technique in molecular biology that allows studying genome wide transcriptional responses. However...
Tung T. Nguyen, Richard R. Almon, Debra C. DuBois,...