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BMCBI
2004
177views more  BMCBI 2004»
13 years 7 months ago
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
Andrew F. Neuwald, Jun S. Liu
BMCBI
2004
151views more  BMCBI 2004»
13 years 7 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich
CCR
2004
63views more  CCR 2004»
13 years 7 months ago
QoS-aware multicasting in DiffServ domains
Although many QoS-based multicast routing protocols have been proposed in recent years, most of them are based on per-flow resource reservation, which cannot be deployed within dif...
Zhi Li, Prasant Mohapatra
CC
2002
Springer
145views System Software» more  CC 2002»
13 years 7 months ago
Forwarding in Attribute Grammars for Modular Language Design
Abstract. Forwarding is a technique for providing default attribute definitions in attribute grammars that is helpful in the modular implementation of programming languages. It com...
Eric Van Wyk, Oege de Moor, Kevin Backhouse, Paul ...
BMCBI
2010
113views more  BMCBI 2010»
13 years 7 months ago
Improving performance of mammalian microRNA target prediction
Background: MicroRNAs (miRNAs) are single-stranded non-coding RNAs known to regulate a wide range of cellular processes by silencing the gene expression at the protein and/or mRNA...
Hui Liu, Dong Yue, Yidong Chen, Shou-Jiang Gao, Yu...