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BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
14 years 17 hour ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu
CSB
2003
IEEE
116views Bioinformatics» more  CSB 2003»
14 years 15 hour ago
Towards Index-based Similarity Search for Protein Structure Databases
We propose two methods for finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements) of prote...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...
SIGMOD
1999
ACM
110views Database» more  SIGMOD 1999»
13 years 11 months ago
Multi-dimensional Selectivity Estimation Using Compressed Histogram Information
The database query optimizer requires the estimation of the query selectivity to find the most efficient access plan. For queries referencing multiple attributes from the same rel...
Ju-Hong Lee, Deok-Hwan Kim, Chin-Wan Chung
VLDB
1997
ACM
132views Database» more  VLDB 1997»
13 years 11 months ago
A Foundation for Multi-dimensional Databases
We present a multi-dimensional database model, which we believe can serve as a conceptual model for On-Line Analytical Processing (OLAP)-based applications. Apart from providing t...
Marc Gyssens, Laks V. S. Lakshmanan
ISMB
2003
13 years 8 months ago
PSI: indexing protein structures for fast similarity search
We consider the problem of finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements). Later, ...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...