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BMCBI
2010
156views more  BMCBI 2010»
13 years 7 months ago
Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways
Background: Pathways provide topical descriptions of cellular circuitry. Comparing analogous pathways reveals intricate insights into individual functional differences among speci...
Adi Mano, Tamir Tuller, Oded Béjà, R...
BMCBI
2008
211views more  BMCBI 2008»
13 years 7 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
ARC
2009
Springer
175views Hardware» more  ARC 2009»
14 years 2 months ago
A Hardware Accelerated Simulation Environment for Spiking Neural Networks
Spiking Neural Networks (SNNs) model the biological functions of the human brain enabling neuro/computer scientists to investigate how arrays of neurons can be used to solve comput...
Brendan P. Glackin, Jim Harkin, T. Martin McGinnit...
COMPSAC
2009
IEEE
14 years 2 months ago
Real-Time Guarantees in Flexible Advance Reservations
—This paper deals with the problem of scheduling workflow applications with Quality of Service (QoS) constraints, comprising real-time and interactivity constraints, over a servi...
Kleopatra Konstanteli, Dimosthenis Kyriazis, Theod...
BMCBI
2010
126views more  BMCBI 2010»
13 years 7 months ago
GeneBrowser 2: an application to explore and identify common biological traits in a set of genes
Background: The development of high-throughput laboratory techniques created a demand for computer-assisted result analysis tools. Many of these techniques return lists of genes w...
Joel Arrais, João Fernandes, João Pe...