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» Multiple Sequence Alignment using Fuzzy Logic
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ISMB
1997
13 years 8 months ago
Automated Alignment of RNA Sequences to Pseudoknotted Structures
Seq7 is a newprogramfor generating multiple structure-based alignments of RNAsequences. Byusing a variant of Dijkstra’s algorithm to find the shortest path through a specially c...
Jack E. Tabaska, Gary D. Stormo
DCC
2009
IEEE
14 years 8 months ago
Source Coding Scheme for Multiple Sequence Alignments
Rapid development of DNA sequencing technologies exponentially increases the amount of publicly available genomic data. Whole genome multiple sequence alignments represent a parti...
Pavol Hanus, Janis Dingel, Georg Chalkidis, Joachi...
CPM
1998
Springer
115views Combinatorics» more  CPM 1998»
13 years 11 months ago
Aligning Alignments
d abstract) John Kececioglu and Dean Starrett Department of Computer Science The University of Arizona Tucson AZ 85721, USA A basic computational problem that arises in both the...
John D. Kececioglu, Weiqing Zhang
ISCAPDCS
2007
13 years 9 months ago
PARALLEL-TCOFFEE: A parallel multiple sequence aligner
In this paper we present a parallel implementation of T–Coffee — a widely used multiple sequence alignment package. Our software supports a majority of options provided by the...
Jaroslaw Zola, Xiao Yang, Adrian Rospondek, Sriniv...
DLOG
2010
13 years 5 months ago
Optimization Techniques for Fuzzy Description Logics
Sophisticated uncertainty representation and reasoning are necessary for the alignment and integration of Web data from different sources. For this purpose the extension of the Des...
Nikos Simou, Theofilos P. Mailis, Giorgos Stoilos,...