41 search results - page 3 / 9 » Multiple Structural RNA Alignment with Lagrangian Relaxation |
NAR
2008
13 years 5 months ago
2008
Regulatory RNAs play essential roles in many essential biological processes, ranging from gene regulation to protein synthesis. This work presents a web-based tool, RNALogo, to cr...
ICASSP
2011
IEEE
12 years 10 months ago
2011
IEEE
TurboFold, an iterative algorithm for estimating the common secondary structures of multiple RNA homologs, is presented. The algorithm is motivated by and has structure and attrib...
ISMB
1997
13 years 8 months ago
1997
Seq7 is a newprogramfor generating multiple structure-based alignments of RNAsequences. Byusing a variant of Dijkstra’s algorithm to find the shortest path through a specially c...
NAR
2007
13 years 6 months ago
2007
Many non-coding RNA genes and cis-acting regulatory elements of mRNAs contain RNA secondary structures that are critical for their function. Such functional RNAs can be predicted ...
BMCBI
2005
13 years 6 months ago
2005
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...