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» Multiple alignment by aligning alignments
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CIKM
2009
Springer
14 years 5 months ago
Linear predictive coding representation of correlated mutation for protein sequence alignment
Background: Although both conservation and correlated mutation (CM) are important information reflecting the different sorts of context in multiple sequence alignment, most of ali...
Chan-seok Jeong, Dongsup Kim
LCPC
2009
Springer
14 years 3 months ago
Enforcing Textual Alignment of Collectives Using Dynamic Checks
Abstract. Many parallel programs are written in a single-program, multipledata (SPMD) style, in which synchronization is provided using collective operations that all threads execu...
Amir Kamil, Katherine A. Yelick
PAMI
2002
85views more  PAMI 2002»
13 years 10 months ago
Spatio-Temporal Alignment of Sequences
This paper studies the problem of sequence-to-sequence alignment, namely, establishing correspondences in time and in space between two different video sequences of the same dynami...
Yaron Caspi, Michal Irani
CPM
2004
Springer
156views Combinatorics» more  CPM 2004»
14 years 4 months ago
A Computational Model for RNA Multiple Structural Alignment.
Abstract. This paper addresses the problem of aligning multiple sequences of non-coding RNA genes. We approach this problem with the biologically motivated paradigm that scoring of...
Eugene Davydov, Serafim Batzoglou
NAACL
2010
13 years 8 months ago
Prenominal Modifier Ordering via Multiple Sequence Alignment
Producing a fluent ordering for a set of prenominal modifiers in a noun phrase (NP) is a problematic task for natural language generation and machine translation systems. We prese...
Aaron Dunlop, Margaret Mitchell, Brian Roark