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BMCBI
2005
119views more  BMCBI 2005»
13 years 10 months ago
GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures
Background: We introduce GASH, a new, publicly accessible program for structural alignment and superposition. Alignments are scored by the Number of Equivalent Residues (NER), a q...
Daron M. Standley, Hiroyuki Toh, Haruki Nakamura
SEMWEB
2007
Springer
14 years 5 months ago
Hybrid Alignment Strategy for Anatomical Ontologies: Results of the 2007 Ontology Alignment Contest
An ontology is a formal representation of a domain modeling the entities in the domain and their relations. When a domain is represented by multiple ontologies, there is a need for...
Songmao Zhang, Olivier Bodenreider
BMCBI
2005
125views more  BMCBI 2005»
13 years 10 months ago
DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
Background: We present a complete re-implementation of the segment-based approach to multiple protein alignment that contains a number of improvements compared to the previous ver...
Amarendran R. Subramanian, Jan Weyer-Menkhoff, Mic...
ACL
2003
14 years 8 days ago
Reliable Measures for Aligning Japanese-English News Articles and Sentences
We have aligned Japanese and English news articles and sentences to make a large parallel corpus. We first used a method based on cross-language information retrieval (CLIR) to a...
Masao Utiyama, Hitoshi Isahara
SSDBM
2006
IEEE
163views Database» more  SSDBM 2006»
14 years 4 months ago
ACache: Using Caching to Improve the Performance of Multiple Sequence Alignments
Multiple sequence alignment represents a class of powerful bioinformatics tools with many uses in computational biology ranging from discovery of characteristic motifs and conserv...
Xun Tu, Kajal T. Claypool, Cindy X. Chen