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KELSI
2004
Springer
14 years 4 months ago
A Randomized Algorithm for Distance Matrix Calculations in Multiple Sequence Alignment
Multiple sequence alignment (MSA) is a vital problem in biology. Optimal alignment of multiple sequences becomes impractical even for a modest number of sequences [1] since the gen...
Sanguthevar Rajasekaran, Vishal Thapar, Hardik Dav...
RECOMB
2008
Springer
14 years 11 months ago
Fast and Accurate Alignment of Multiple Protein Networks
Comparative analysis of protein networks has proven to be a powerful approach for elucidating network structure and predicting protein function and interaction. A fundamental chall...
Maxim Kalaev, Vineet Bafna, Roded Sharan
ARC
2007
Springer
123views Hardware» more  ARC 2007»
14 years 2 months ago
Multiple Sequence Alignment Using Reconfigurable Computing
The alignment of multiple protein (or DNA) sequences is a current problem in Bioinformatics. ClustalW is the most popular heuristic algorithm for multiple sequence alignment. Pairw...
Carlos R. Erig Lima, Heitor S. Lopes, Maiko R. Mor...
GECCO
2006
Springer
171views Optimization» more  GECCO 2006»
14 years 2 months ago
A hybrid genetic search for multiple sequence alignment
This paper proposes a hybrid genetic algorithm for multiple sequence alignment. The algorithm evolves guide sequences and aligns input sequences based on the guide sequences. It a...
Seung-Hyun Moon, Sung-Soon Choi, Byung Ro Moon
JUCS
2000
91views more  JUCS 2000»
13 years 10 months ago
Syntax, Parsing and Production of Natural Language in a Framework of Information Compression by Multiple Alignment, Unification
This article introduces the idea that information compression by multiple alignment, unification and search (ICMAUS) provides a framework within which natural language syntax may ...
J. Gerard Wolff