Background: For the purposes of finding and aligning noncoding RNA gene- and cis-regulatory elements in multiple-genome datasets, it is useful to be able to derive multi-sequence ...
Finding all the occurrences of a twig pattern on multiple elements in an XML document is a core operation for efficient evaluation of XML queries. Holistic twig join algorithms, Tw...
Background: Identifying cis-regulatory elements is crucial to understanding gene expression, which highlights the importance of the computational detection of overrepresented tran...
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Conducting controlled experiments about programming activities often requires the use of multiple tasks of similar difficulty. In previously reported work about a controlled exper...