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BMCBI
2004
126views more  BMCBI 2004»
13 years 7 months ago
A probabilistic model for the evolution of RNA structure
Background: For the purposes of finding and aligning noncoding RNA gene- and cis-regulatory elements in multiple-genome datasets, it is useful to be able to derive multi-sequence ...
Ian Holmes
DASFAA
2007
IEEE
174views Database» more  DASFAA 2007»
14 years 1 months ago
Efficient Holistic Twig Joins in Leaf-to-Root Combining with Root-to-Leaf Way
Finding all the occurrences of a twig pattern on multiple elements in an XML document is a core operation for efficient evaluation of XML queries. Holistic twig join algorithms, Tw...
Guoliang Li, Jianhua Feng, Yong Zhang, Lizhu Zhou
BMCBI
2006
124views more  BMCBI 2006»
13 years 7 months ago
Predicting transcription factor binding sites using local over-representation and comparative genomics
Background: Identifying cis-regulatory elements is crucial to understanding gene expression, which highlights the importance of the computational detection of overrepresented tran...
Matthieu Defrance, Hélène Touzet
BMCBI
2010
104views more  BMCBI 2010»
13 years 7 months ago
Parameters for accurate genome alignment
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Martin C. Frith, Michiaki Hamada, Paul Horton
ICSE
2008
IEEE-ACM
14 years 7 months ago
Creating a cognitive metric of programming task difficulty
Conducting controlled experiments about programming activities often requires the use of multiple tasks of similar difficulty. In previously reported work about a controlled exper...
Brian de Alwis, Gail C. Murphy, Shawn Minto