Background: The prediction of a consensus structure for a set of related RNAs is an important first step for subsequent analyses. RNAalifold, which computes the minimum energy str...
Stephan H. F. Bernhart, Ivo L. Hofacker, Sebastian...
In [13] we reported the genome sequences of S. paradoxus, S. mikatae and S. bayanus and compared these three yeast species to their close relative, S. cerevisiae. Genome-wide comp...
Manolis Kamvysselis, Nick Patterson, Bruce Birren,...
Background: The classification of protein sequences using string algorithms provides valuable insights for protein function prediction. Several methods, based on a variety of diff...
Biosequences typically have a small alphabet, a long length, and patterns containing gaps (i.e., “don’t care”) of arbitrary size. Mining frequent patterns in such sequences ...
In this paper we address the problem of unsupervised Web data extraction. We show that unsupervised Web data extraction becomes feasible when supposing pages that are made up of r...