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» Multiple sequence alignment using partial order graphs
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BMCBI
2008
122views more  BMCBI 2008»
13 years 7 months ago
Grammar-based distance in progressive multiple sequence alignment
Background: We propose a multiple sequence alignment (MSA) algorithm and compare the alignment-quality and execution-time of the proposed algorithm with that of existing algorithm...
David J. Russell, Hasan H. Otu, Khalid Sayood
ISMB
1997
13 years 8 months ago
Automated Alignment of RNA Sequences to Pseudoknotted Structures
Seq7 is a newprogramfor generating multiple structure-based alignments of RNAsequences. Byusing a variant of Dijkstra’s algorithm to find the shortest path through a specially c...
Jack E. Tabaska, Gary D. Stormo
BMCBI
2006
115views more  BMCBI 2006»
13 years 6 months ago
The accuracy of several multiple sequence alignment programs for proteins
Background: There have been many algorithms and software programs implemented for the inference of multiple sequence alignments of protein and DNA sequences. The "true" ...
Paulo A. S. Nuin, Zhouzhi Wang, Elisabeth R. M. Ti...
ICB
2009
Springer
255views Biometrics» more  ICB 2009»
13 years 4 months ago
Automatic Partial Face Alignment in NIR Video Sequences
Face recognition with partial face images is an important problem in face biometrics. The necessity can arise in not so constrained environments such as in surveillance video, or p...
Jimei Yang, ShengCai Liao, Stan Z. Li
IPPS
2009
IEEE
14 years 1 months ago
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell