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CSR
2006
Springer
14 years 1 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
FORMATS
2006
Springer
14 years 1 months ago
Extended Directed Search for Probabilistic Timed Reachability
Current numerical model checkers for stochastic systems can efficiently analyse stochastic models. However, the fact that they are unable to provide debugging information constrain...
Husain Aljazzar, Stefan Leue
BMCBI
2008
142views more  BMCBI 2008»
13 years 10 months ago
Optimal neighborhood indexing for protein similarity search
Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
Pierre Peterlongo, Laurent Noé, Dominique L...
ESWA
2007
100views more  ESWA 2007»
13 years 10 months ago
Using memetic algorithms with guided local search to solve assembly sequence planning
The goal of assembly planning consists in generating feasible sequences to assemble a product and selecting an efficient assembly sequence from which related constraint factors su...
Hwai-En Tseng, Wen-Pai Wang, Hsun-Yi Shih
SIGMOD
2006
ACM
232views Database» more  SIGMOD 2006»
14 years 10 months ago
To search or to crawl?: towards a query optimizer for text-centric tasks
Text is ubiquitous and, not surprisingly, many important applications rely on textual data for a variety of tasks. As a notable example, information extraction applications derive...
Panagiotis G. Ipeirotis, Eugene Agichtein, Pranay ...