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WABI
2001
Springer
162views Bioinformatics» more  WABI 2001»
14 years 2 months ago
A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites
A central issue in molecular biology is understanding the regulatory mechanisms that control gene expression. The recent flood of genomic and postgenomic data opens the way for co...
Yoseph Barash, Gill Bejerano, Nir Friedman
BMCBI
2004
100views more  BMCBI 2004»
13 years 10 months ago
Handling multiple testing while interpreting microarrays with the Gene Ontology Database
Background: The development of software tools that analyze microarray data in the context of genetic knowledgebases is being pursued by multiple research groups using different me...
Michael V. Osier, Hongyu Zhao, Kei-Hoi Cheung
BMCBI
2010
125views more  BMCBI 2010»
13 years 10 months ago
Asymmetric microarray data produces gene lists highly predictive of research literature on multiple cancer types
Background: Much of the public access cancer microarray data is asymmetric, belonging to datasets containing no samples from normal tissue. Asymmetric data cannot be used in stand...
Noor B. Dawany, Aydin Tozeren
CSDA
2006
81views more  CSDA 2006»
13 years 10 months ago
A recursive approach to detect multivariable conditional variance components and conditional random effects
A complex trait like crop yield is determined by its component traits. Multivariable conditional analysis in a general mixed linear model is helpful in dissecting the gene express...
Jixiang Wu, Dongfeng Wu, Johnie N. Jenkins Jr., Ja...
SIAMCOMP
2008
123views more  SIAMCOMP 2008»
13 years 10 months ago
Approximation Algorithms for Biclustering Problems
One of the main goals in the analysis of microarray data is to identify groups of genes and groups of experimental conditions (including environments, individuals, and tissues) tha...
Lusheng Wang, Yu Lin, Xiaowen Liu