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BMCBI
2011
13 years 1 days ago
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping
Background: Second generation sequencing technologies yield DNA sequence data at ultra high-throughput. Common to most biological applications is a mapping of the reads to an almo...
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, K...
RECOMB
2008
Springer
14 years 8 months ago
Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony
Understanding the variation of recombination rates across a given genome is crucial for disease gene mapping and for detecting signatures of selection, to name just a couple of app...
Jotun Hein, Rune B. Lyngsø, Yun S. Song
ICPR
2010
IEEE
13 years 11 months ago
Spatial Representation for Efficient Sequence Classification
We present a general, simple feature representation of sequences that allows efficient inexact matching, comparison and classification of sequential data. This approach, recently ...
Pavel Kuksa, Vladimir Pavlovic
ECML
1993
Springer
14 years 16 days ago
Integrated Learning Architectures
Research in systems where learning is integrated to other components like problem solving, vision, or natural language is becoming an important topic for Machine Learning. Situatio...
Enric Plaza, Agnar Aamodt, Ashwin Ram, Walter Van ...
EVOW
2008
Springer
13 years 10 months ago
Reactive Stochastic Local Search Algorithms for the Genomic Median Problem
Abstract. The genomic median problem is an optimization problem inspired by a biological issue: it aims at finding the chromosome organization of the common ancestor to multiple li...
Renaud Lenne, Christine Solnon, Thomas Stützl...