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» NITPICK: peak identification for mass spectrometry data
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ICPPW
2009
IEEE
13 years 6 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
EVOW
2007
Springer
14 years 2 months ago
Robust Peak Detection and Alignment of nanoLC-FT Mass Spectrometry Data
In liquid chromatography-mass spectrometry (LC-MS) based expression proteomics, samples from different groups are analyzed comparatively in order to detect differences that can p...
Marius C. Codrea, Connie R. Jimenez, Sander R. Pie...
BMCBI
2010
161views more  BMCBI 2010»
13 years 8 months ago
BPDA - A Bayesian peptide detection algorithm for mass spectrometry
Background: Mass spectrometry (MS) is an essential analytical tool in proteomics. Many existing algorithms for peptide detection are based on isotope template matching and usually...
Youting Sun, Jianqiu Zhang, Ulisses Braga-Neto, Ed...
BMCBI
2004
153views more  BMCBI 2004»
13 years 8 months ago
Computational protein biomarker prediction: a case study for prostate cancer
Background: Recent technological advances in mass spectrometry pose challenges in computational mathematics and statistics to process the mass spectral data into predictive models...
Michael Wagner, Dayanand N. Naik, Alex Pothen, Sri...
BMCBI
2011
13 years 4 days ago
Smith-Waterman Peak Alignment for Comprehensive Two-dimensional Gas Chromatography Mass Spectrometry
Background: Comprehensive two-dimensional gas chromatography coupled with mass spectrometry (GC × GCMS) is a powerful technique which has gained increasing attention over the las...
Seongho Kim, Imhoi Koo, Aiqin Fang, Xiang Zhang