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ICALP
2005
Springer
14 years 1 months ago
Stochastic Steiner Trees Without a Root
Abstract. This paper considers the Steiner tree problem in the model of twostage stochastic optimization with recourse. This model, the focus of much recent research [1–4], tries...
Anupam Gupta, Martin Pál
RECOMB
2000
Springer
13 years 11 months ago
A compression algorithm for DNA sequences and its applications in genome comparison
We present a lossless compression algorithm, GenCompress, for genetic sequences, based on searching for approximate repeats. Our algorithm achieves the best compression ratios for...
Xin Chen, Sam Kwong, Ming Li
BMCBI
2010
117views more  BMCBI 2010»
13 years 7 months ago
New decoding algorithms for Hidden Markov Models using distance measures on labellings
Background: Existing hidden Markov model decoding algorithms do not focus on approximately identifying the sequence feature boundaries. Results: We give a set of algorithms to com...
Daniel G. Brown 0001, Jakub Truszkowski
ALENEX
2009
106views Algorithms» more  ALENEX 2009»
13 years 8 months ago
Drawing Binary Tanglegrams: An Experimental Evaluation
A tanglegram is a pair of trees whose leaf sets are in oneto-one correspondence; matching leaves are connected by inter-tree edges. In applications such as phylogenetics or hierar...
Martin Nöllenburg, Markus Völker, Alexan...
COMPGEOM
2007
ACM
13 years 11 months ago
On approximate halfspace range counting and relative epsilon-approximations
The paper consists of two major parts. In the first part, we re-examine relative -approximations, previously studied in [12, 13, 18, 25], and their relation to certain geometric p...
Boris Aronov, Sariel Har-Peled, Micha Sharir