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BMCBI
2010
126views more  BMCBI 2010»
13 years 7 months ago
Cgaln: fast and space-efficient whole-genome alignment
Background: Whole-genome sequence alignment is an essential process for extracting valuable information about the functions, evolution, and peculiarities of genomes under investig...
Ryuichiro Nakato, Osamu Gotoh
EVOW
2007
Springer
14 years 1 months ago
Robust Peak Detection and Alignment of nanoLC-FT Mass Spectrometry Data
In liquid chromatography-mass spectrometry (LC-MS) based expression proteomics, samples from different groups are analyzed comparatively in order to detect differences that can p...
Marius C. Codrea, Connie R. Jimenez, Sander R. Pie...
BIBM
2008
IEEE
110views Bioinformatics» more  BIBM 2008»
14 years 2 months ago
Genome Alignments Using MPI-LAGAN
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Ruinan Zhang, Huzefa Rangwala, George Karypis
TVLSI
2008
111views more  TVLSI 2008»
13 years 7 months ago
GlitchLess: Dynamic Power Minimization in FPGAs Through Edge Alignment and Glitch Filtering
This paper describes Glitchless, a circuit-level technique for reducing power in FPGAs by eliminating unnecessary logic transitions called glitches. This is done by adding program...
Julien Lamoureux, Guy G. Lemieux, Steven J. E. Wil...
SOCO
2009
Springer
14 years 2 months ago
Feature (De)composition in Functional Programming
Abstract. The separation of concerns is a fundamental principle in software engineering. Crosscutting concerns are concerns that do not align with hierarchical and block decomposit...
Sven Apel, Christian Kästner, Armin Grö&...