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» Network bargaining: algorithms and structural results
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CSB
2003
IEEE
130views Bioinformatics» more  CSB 2003»
14 years 1 months ago
A Computational Approach to Reconstructing Gene Regulatory Networks
Reverse-engineering of gene networks using linear models often results in an underdetermined system because of excessive unknown parameters. In addition, the practical utility of ...
Xutao Deng, Hesham H. Ali
KDD
2009
ACM
192views Data Mining» more  KDD 2009»
14 years 2 months ago
Primal sparse Max-margin Markov networks
Max-margin Markov networks (M3 N) have shown great promise in structured prediction and relational learning. Due to the KKT conditions, the M3 N enjoys dual sparsity. However, the...
Jun Zhu, Eric P. Xing, Bo Zhang
BMCBI
2010
150views more  BMCBI 2010»
13 years 8 months ago
Systematic calibration of a cell signaling network model
Background: Mathematical modeling is being applied to increasingly complex biological systems and datasets; however, the process of analyzing and calibrating against experimental ...
Kyoung Ae Kim, Sabrina L. Spencer, John G. Albeck,...
CEC
2010
IEEE
13 years 2 months ago
Parameter estimation with term-wise decomposition in biochemical network GMA models by hybrid regularized Least Squares-Particle
High-throughput analytical techniques such as nuclear magnetic resonance, protein kinase phosphorylation, and mass spectroscopic methods generate time dense profiles of metabolites...
Prospero C. Naval, Luis G. Sison, Eduardo R. Mendo...
INFOCOM
2011
IEEE
12 years 11 months ago
Continuous multi-dimensional top-k query processing in sensor networks
—Top-k query has long been an important topic in many fields of computer science. Efficient implementation of the top-k queries is the key for information searching. With the n...
Hongbo Jiang, Jie Cheng, Dan Wang, Chonggang Wang,...