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» New Algorithms for SIMD Alignment
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ICASSP
2009
IEEE
14 years 2 months ago
Query by tapping system based on alignment algorithm
Query-by-tapping systems are content-based music retrieval systems that allow users to tap or clap in a microphone the rhythmic pattern of the melody requested. In this paper, a n...
Pierre Hanna, Matthias Robine
ENTCS
2002
98views more  ENTCS 2002»
13 years 7 months ago
Verified Code Generation for Embedded Systems
Digital signal processors provide specialized SIMD (single instruction multiple data) operations designed to dramatically increase performance in embedded systems. While these ope...
Sabine Glesner, Rubino Geiß, Boris Boesler
BMCBI
2008
123views more  BMCBI 2008»
13 years 7 months ago
PocketMatch: A new algorithm to compare binding sites in protein structures
Background: Recognizing similarities and deriving relationships among protein molecules is a fundamental requirement in present-day biology. Similarities can be present at various...
Kalidas Yeturu, Nagasuma Chandra
IPPS
2006
IEEE
14 years 1 months ago
Multiple sequence alignment by quantum genetic algorithm
In this paper we describe a new approach for the well known problem in bioinformatics: Multiple Sequence Alignment (MSA). MSA is fundamental task as it represents an essential pla...
L. Abdesslem, M. Soham, B. Mohamed
BMCBI
2008
83views more  BMCBI 2008»
13 years 7 months ago
An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast
Background: Aligning RNA sequences with low sequence identity has been a challenging problem since such a computation essentially needs an algorithm with high complexities for tak...
Akito Taneda