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» New Algorithms for SIMD Alignment
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CORR
2006
Springer
159views Education» more  CORR 2006»
13 years 7 months ago
Structural Alignments of pseudo-knotted RNA-molecules in polynomial time
An RNA molecule is structured on several layers. The primary and most obvious structure is its sequence of bases, i.e. a word over the alphabet {A, C, G, U}. The higher structure i...
Michael Brinkmeier
JCB
2000
101views more  JCB 2000»
13 years 7 months ago
Evaluation Measures of Multiple Sequence Alignments
Multiple sequence alignments (MSAs) are frequently used in the study of families of protein sequences or DNA/RNA sequences. They are a fundamental tool for the understanding of th...
Gaston H. Gonnet, Chantal Korostensky, Steven A. B...
MICCAI
2004
Springer
14 years 8 months ago
An Uncertainty-Driven Hybrid of Intensity-Based and Feature-Based Registration with Application to Retinal and Lung CT Images
Abstract. A new hybrid of feature-based and intensity-based registration is presented. The algorithm reflects a new understanding of the role of alignment error in the generation o...
Charles V. Stewart, Ying-Lin Lee, Chia-Ling Tsai
WABI
2005
Springer
109views Bioinformatics» more  WABI 2005»
14 years 1 months ago
Optimal Protein Threading by Cost-Splitting
Abstract. In this paper, we use integer programming approach for solving a hard combinatorial optimization problem, namely protein threading. For this sequence-to-structure alignme...
Philippe Veber, Nicola Yanev, Rumen Andonov, Vince...
FBIT
2007
IEEE
13 years 11 months ago
Mapping Genetic Influences on Brain Shape Using Multi-Atlas Fluid Image Alignment
In this pilot study, we developed a set of computer vision based surface segmentation and statistical shape analysis algorithms to study genetic influences on brain structure in a...
Meena Mani, Yi-Yu Chou, Natasha Lepore, Agatha D. ...