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» New Algorithms for SIMD Alignment
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COCOA
2007
Springer
14 years 1 months ago
A New Dynamic Programming Algorithm for Multiple Sequence Alignment
Abstract. Multiple sequence alignment (MSA) is one of the most basic and central tasks for many studies in modern biology. In this paper, we present a new progressive alignment alg...
Jean-Michel Richer, Vincent Derrien, Jin-Kao Hao
BMCBI
2010
103views more  BMCBI 2010»
13 years 7 months ago
MTRAP: Pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of r
Background: Sequence alignment is one of the most important techniques to analyze biological systems. It is also true that the alignment is not complete and we have to develop it ...
Toshihide Hara, Keiko Sato, Masanori Ohya
ICDAR
2011
IEEE
12 years 7 months ago
A New Text-Line Alignment Approach Based on Piece-Wise Painting Algorithm for Handwritten Documents
—Because of writing styles of different individuals, some of the text-lines may be curved in shape. For recognition of such text-lines, their proper alignment is necessary. In th...
Alireza Alaei, P. Nagabhushan, Umapada Pal
ISCAS
2003
IEEE
144views Hardware» more  ISCAS 2003»
14 years 29 days ago
A flexible global readout architecture for an analogue SIMD vision chip
A new vision chip, SCAMP-2, has been developed in a 0.35µm CMOS technology. In this paper, the design of the chip is presented, with particular emphasis on its readout architectu...
Piotr Dudek
PPSN
2004
Springer
14 years 1 months ago
An Evolutionary Algorithm for the Maximum Weight Trace Formulation of the Multiple Sequence Alignment Problem
Abstract. The multiple sequence alignment problem (MSA) can be reformulated as the problem of finding a maximum weight trace in an alignment graph, which is derived from all pairw...
Gabriele Koller, Günther R. Raidl