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» New Algorithms for SIMD Alignment
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TOG
2008
95views more  TOG 2008»
13 years 7 months ago
Spectral quadrangulation with orientation and alignment control
This paper presents a new quadrangulation algorithm, extending the spectral surface quadrangulation approach where the coarse quadrangular structure is derived from the Morse-Smal...
Jin Huang, Muyang Zhang, Jin Ma, Xinguo Liu, Leif ...
TASLP
2011
13 years 2 months ago
Underdetermined Convolutive Blind Source Separation via Frequency Bin-Wise Clustering and Permutation Alignment
—This paper presents a blind source separation method for convolutive mixtures of speech/audio sources. The method can even be applied to an underdetermined case where there are ...
Hiroshi Sawada, Shoko Araki, Shoji Makino
BMCBI
2008
244views more  BMCBI 2008»
13 years 8 months ago
RNAalifold: improved consensus structure prediction for RNA alignments
Background: The prediction of a consensus structure for a set of related RNAs is an important first step for subsequent analyses. RNAalifold, which computes the minimum energy str...
Stephan H. F. Bernhart, Ivo L. Hofacker, Sebastian...
BMCBI
2011
12 years 11 months ago
Improving pan-genome annotation using whole genome multiple alignment
Background: Rapid annotation and comparisons of genomes from multiple isolates (pan-genomes) is becoming commonplace due to advances in sequencing technology. Genome annotations c...
Samuel V. Angiuoli, Julie C. Dunning Hotopp, Steve...
VLSID
2005
IEEE
167views VLSI» more  VLSID 2005»
14 years 8 months ago
A Methodology and Tooling Enabling Application Specific Processor Design
This paper presents a highly efficient processor design methodology based on the LISA 2.0 language. Typically the architecture design phase is dominated by an iterative processor ...
Andreas Hoffmann, Frank Fiedler, Achim Nohl, Suren...