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» New heuristics for the maximum diversity problem
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GECCO
2009
Springer
152views Optimization» more  GECCO 2009»
14 years 3 days ago
A data-based coding of candidate strings in the closest string problem
Given a set of strings S of equal lengths over an alphabet Σ, the closest string problem seeks a string over Σ whose maximum Hamming distance to any of the given strings is as s...
Bryant A. Julstrom
CPAIOR
2005
Springer
14 years 1 months ago
Filtering Algorithms for the NValue Constraint
Abstract. The NValue constraint counts the number of different values assigned to a vector of variables. Propagating generalized arc consistency on this constraint is NP-hard. We ...
Christian Bessière, Emmanuel Hebrard, Brahi...
COCOON
2008
Springer
13 years 9 months ago
Quasi-bicliques: Complexity and Binding Pairs
Abstract. Protein-protein interactions (PPIs) are one of the most important mechanisms in cellular processes. To model protein interaction sites, recent studies have suggested to f...
Xiaowen Liu, Jinyan Li, Lusheng Wang
CSB
2004
IEEE
109views Bioinformatics» more  CSB 2004»
13 years 11 months ago
Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as maximum parsimony (MP) and maximum likelihood (ML). Conventional MP heuristics for produc...
Usman Roshan, Bernard M. E. Moret, Tandy Warnow, T...
WEA
2007
Springer
108views Algorithms» more  WEA 2007»
14 years 1 months ago
Engineering Algorithms for Approximate Weighted Matching
We present a systematic study of approximation algorithms for the maximum weight matching problem. This includes a new algorithm which provides the simple greedy method with a rece...
Jens Maue, Peter Sanders