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» Non-contiguous Sequence Pattern Queries
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BMCBI
2008
130views more  BMCBI 2008»
13 years 7 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
SECON
2007
IEEE
14 years 1 months ago
Query privacy in wireless sensor networks
— Existing mechanisms for querying wireless sensor networks leak client interests to the servers performing the queries. The leaks are not only in terms of specific regions but ...
Bogdan Carbunar, Yang Yu, Weidong Shi, Michael Pea...
SSDBM
2006
IEEE
163views Database» more  SSDBM 2006»
14 years 1 months ago
ACache: Using Caching to Improve the Performance of Multiple Sequence Alignments
Multiple sequence alignment represents a class of powerful bioinformatics tools with many uses in computational biology ranging from discovery of characteristic motifs and conserv...
Xun Tu, Kajal T. Claypool, Cindy X. Chen
PODS
2010
ACM
213views Database» more  PODS 2010»
14 years 20 days ago
Expressive languages for path queries over graph-structured data
For many problems arising in the setting of graph querying (such as finding semantic associations in RDF graphs, exact and approximate pattern matching, sequence alignment, etc.)...
Pablo Barceló, Carlos A. Hurtado, Leonid Li...
SIGMOD
2006
ACM
232views Database» more  SIGMOD 2006»
14 years 7 months ago
High-performance complex event processing over streams
In this paper, we present the design, implementation, and evaluation of a system that executes complex event queries over real-time streams of RFID readings encoded as events. The...
Eugene Wu 0002, Yanlei Diao, Shariq Rizvi