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RECOMB
2006
Springer
14 years 10 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
RECOMB
2005
Springer
14 years 10 months ago
Information Theoretic Approaches to Whole Genome Phylogenies
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
David Burstein, Igor Ulitsky, Tamir Tuller, Benny ...
RECOMB
2005
Springer
14 years 10 months ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao
STOC
2004
ACM
145views Algorithms» more  STOC 2004»
14 years 10 months ago
Using mixture models for collaborative filtering
A collaborative filtering system at an e-commerce site or similar service uses data about aggregate user behavior to make recommendations tailored to specific user interests. We d...
Jon M. Kleinberg, Mark Sandler
OSDI
2006
ACM
14 years 10 months ago
Operating System Profiling via Latency Analysis
Operating systems are complex and their behavior depends on many factors. Source code, if available, does not directly help one to understand the OS's behavior, as the behavi...
Nikolai Joukov, Avishay Traeger, Rakesh Iyer, Char...