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BMCBI
2008
77views more  BMCBI 2008»
13 years 9 months ago
SeqAn An efficient, generic C++ library for sequence analysis
Background: The use of novel algorithmic techniques is pivotal to many important problems in life science. For example the sequencing of the human genome [1] would not have been p...
Andreas Döring, David Weese, Tobias Rausch, K...
BMCBI
2008
176views more  BMCBI 2008»
13 years 9 months ago
H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments
Background: A multiple sequence alignment (MSA) generated for a protein can be used to characterise residues by means of a statistical analysis of single columns. In addition to t...
Rainer Merkl, Matthias Zwick
ICSM
2007
IEEE
14 years 4 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
ACCV
2009
Springer
14 years 1 months ago
People Tracking and Segmentation Using Efficient Shape Sequences Matching
Abstract. We design an effective shape prior embedded human silhouettes extraction algorithm. Human silhouette extraction is found challenging because of articulated structures, po...
Junqiu Wang, Yasushi Yagi, Yasushi Makihara
BMCBI
2010
124views more  BMCBI 2010»
13 years 9 months ago
Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated
Background: Large datasets of protein interactions provide a rich resource for the discovery of Short Linear Motifs (SLiMs) that recur in unrelated proteins. However, existing met...
Norman E. Davey, Richard J. Edwards, Denis C. Shie...