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BMCBI
2010
131views more  BMCBI 2010»
13 years 6 months ago
A two-step site and mRNA-level model for predicting microRNA targets
Background: Despite experiments showing that the number of microRNA (miRNA) target sites is critical for miRNA targeting, most existing methods focus on identifying individual miR...
Takaya Saito, Pål Sætrom
BMCBI
2005
143views more  BMCBI 2005»
13 years 8 months ago
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries
Background: In expressed sequence tag (EST) sequencing, we are often interested in how many genes we can capture in an EST sample of a targeted size. This information provides ins...
Ji-Ping Z. Wang, Bruce G. Lindsay 0002, Liying Cui...
AAAI
2007
13 years 11 months ago
A Randomized String Kernel and Its Application to RNA Interference
String kernels directly model sequence similarities without the necessity of extracting numerical features in a vector space. Since they better capture complex traits in the seque...
Shibin Qiu, Terran Lane, Ljubomir J. Buturovic
SIAMAM
2010
117views more  SIAMAM 2010»
13 years 7 months ago
Dynamics of Three-Dimensional Gravity-Capillary Solitary Waves in Deep Water
A model equation for gravity-capillary waves in deep water is proposed. This model is a quadratic approximation of the deep water potential flow equations, and has wavepacket-type...
Benjamin Akers, Paul A. Milewski
BIOINFORMATICS
2012
11 years 11 months ago
SSuMMo: rapid analysis, comparison and visualization of microbial communities
Motivation: Next-generation sequencing methods are generating increasingly massive datasets, yet still do not fully capture genetic diversity in the richest environments. To under...
Alex L. B. Leach, James P. J. Chong, Kelly R. Rede...