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BIOINFORMATICS
2005
75views more  BIOINFORMATICS 2005»
13 years 10 months ago
DbW: automatic update of a functional family-specific multiple alignment
: Recent advances in gene sequencing have provided complete sequence information for a number of genomes and as a result the amount of data in the sequence databases is growing at ...
Veronique Prigent, Jean-Claude Thierry, Olivier Po...
BMCBI
2010
198views more  BMCBI 2010»
13 years 10 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
AUSDM
2006
Springer
94views Data Mining» more  AUSDM 2006»
14 years 1 months ago
Marking Time in Sequence Mining
Sequence mining is often conducted over static and temporal datasets as well as over collections of events (episodes). More recently, there has also been a focus on the mining of ...
Carl Mooney, John F. Roddick
ICDE
2006
IEEE
178views Database» more  ICDE 2006»
14 years 11 months ago
Declarative Querying for Biological Sequences
The ongoing revolution in life sciences research is producing vast amounts of genetic and proteomic sequence data. Scientists want to pose increasingly complex queries on this dat...
Sandeep Tata, Jignesh M. Patel, James S. Friedman,...
ICDE
2003
IEEE
149views Database» more  ICDE 2003»
14 years 11 months ago
Indexing Weighted-Sequences in Large Databases
We present an index structure for managing weightedsequences in large databases. A weighted-sequence is defined as a two-dimensional structure where each element in the sequence i...
Haixun Wang, Chang-Shing Perng, Wei Fan, Sanghyun ...