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RECOMB
2008
Springer
14 years 10 months ago
De Novo Sequencing of Nonribosomal Peptides
Abstract. While nonribosomal peptides (NRPs) are of tremendous pharmacological importance, there is currently no technology capable of highthroughput sequencing of NRPs. Difficulti...
Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. L...
DCC
2010
IEEE
14 years 5 months ago
Lossless Compression Based on the Sequence Memoizer
In this work we describe a sequence compression method based on combining a Bayesian nonparametric sequence model with entropy encoding. The model, a hierarchy of Pitman-Yor proce...
Jan Gasthaus, Frank Wood, Yee Whye Teh
ICMLA
2007
13 years 11 months ago
Machine learned regression for abductive DNA sequencing
We construct machine learned regressors to predict the behaviour of DNA sequencing data from the fluorescent labelled Sanger method. These predictions are used to assess hypothes...
David Thornley, Maxim Zverev, Stavros Petridis
SDM
2007
SIAM
117views Data Mining» more  SDM 2007»
13 years 11 months ago
Discriminating Subsequence Discovery for Sequence Clustering
In this paper, we explore the discriminating subsequencebased clustering problem. First, several effective optimization techniques are proposed to accelerate the sequence mining p...
Jianyong Wang, Yuzhou Zhang, Lizhu Zhou, George Ka...
ICDE
2008
IEEE
162views Database» more  ICDE 2008»
14 years 11 months ago
Querying Complex Spatio-Temporal Sequences in Human Motion Databases
Content-based retrieval of spatio-temporal patterns from human motion databases is inherently nontrivial since finding effective distance measures for such data is difficult. These...
Yueguo Chen, Shouxu Jiang, Beng Chin Ooi, Anthony ...