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PAKDD
2004
ACM
183views Data Mining» more  PAKDD 2004»
15 years 7 months ago
Constraint-Based Graph Clustering through Node Sequencing and Partitioning
This paper proposes a two-step graph partitioning method to discover constrained clusters with an objective function that follows the well-known minmax clustering principle. Compar...
Yu Qian, Kang Zhang, Wei Lai
RECOMB
2001
Springer
15 years 7 months ago
The greedy path-merging algorithm for sequence assembly
Two different approaches to determining the human genome are currently being pursued: one is the “clone-by-clone” approach, employed by the publicly-funded Human Genome Proje...
Daniel H. Huson, Knut Reinert, Eugene W. Myers
ANOR
2010
139views more  ANOR 2010»
15 years 25 days ago
Some operations research methods for analyzing protein sequences and structures
Operations Research is probably one of the most successful fields of applied mathematics used in Economics, Physics, Chemistry, almost everywhere onehastoanalyzehugeamountsofdata.L...
Piotr Lukasiak, Jacek Blazewicz, Maciej Milostan
BMCBI
2010
121views more  BMCBI 2010»
14 years 12 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
ICPR
2006
IEEE
16 years 3 months ago
Patterns of Co-Linear Equidistant Letter Sequences and Verses
It has been shown ([4], [3]) that equidistant letter sequence (ELS) pairs in the book of Genesis (G) form more compact geometric patterns on the surface of a cylinder than is expe...
Nachum Bombach, Harold Gans