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SIGMOD
2011
ACM
150views Database» more  SIGMOD 2011»
14 years 5 months ago
WHAM: a high-throughput sequence alignment method
Over the last decade the cost of producing genomic sequences has dropped dramatically due to the current so called “next-gen” sequencing methods. However, these next-gen seque...
Yinan Li, Allison Terrell, Jignesh M. Patel
122
Voted
CIBCB
2007
IEEE
15 years 9 months ago
Multiple Sequence Alignment using Fuzzy Logic
—DNA matching is a crucial step in sequence alignment. Since sequence alignment is an approximate matching process there is a need for good approximate algorithms. The process of...
Sara Nasser, Gregory Vert, Monica N. Nicolescu, Al...
GCB
1998
Springer
74views Biometrics» more  GCB 1998»
15 years 6 months ago
Removing Redundancy in SWISS-PROT and TrEMBL
Summary: One of the distinguishing criteria of the SWISSPROT protein sequence data bank is minimal redundancy.
Claire O'Donovan, Maria Jesus Martin, Eric Gl&eacu...
RECOMB
2002
Springer
16 years 2 months ago
Deconvolving sequence variation in mixed DNA populations
We present an original approach to identifying sequence variants in a mixed DNA population from sequence trace data. The heart of the method is based on parsimony: given a wildtyp...
Andy Wildenberg, Steven Skiena, Pavel Sumazin
ICC
2009
IEEE
116views Communications» more  ICC 2009»
15 years 8 days ago
Efficient Implementation of Binary Sequence Generator for WiMAX and WRAN on Programmable Digital Signal Processor
In this paper, an efficient design for implementing binary sequence generator on 32-bit instruction execution mode TI TMS320C6416 DSP is presented. The main goal is to achieve high...
Lok Tiing Tie, Ser Wah Oh, K. J. M. Kua