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121
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BIBM
2008
IEEE
175views Bioinformatics» more  BIBM 2008»
15 years 9 months ago
Integrative Protein Function Transfer Using Factor Graphs and Heterogeneous Data Sources
We propose a novel approach for predicting protein functions of an organism by coupling sequence homology and PPI data between two (or more) species with multifunctional Gene Onto...
Antonina Mitrofanova, Vladimir Pavlovic, Bud Mishr...
112
Voted
BMCBI
2006
94views more  BMCBI 2006»
15 years 2 months ago
Dynamic variable selection in SNP genotype autocalling from APEX microarray data
Background: Single nucleotide polymorphisms (SNPs) are DNA sequence variations, occurring when a single nucleotide
Mohua Podder, William J. Welch, Ruben H. Zamar, Sc...
TIT
2008
74views more  TIT 2008»
15 years 2 months ago
Optimal Parsing Trees for Run-Length Coding of Biased Data
Abstract-- We study coding schemes which encode unconstrained sequences into run-length-limited (d, k)-constrained sequences. We present a general framework for the construction of...
Sharon Aviran, Paul H. Siegel, Jack K. Wolf
112
Voted
EMNLP
2007
15 years 4 months ago
Finding Good Sequential Model Structures using Output Transformations
In Sequential Viterbi Models, such as HMMs, MEMMs, and Linear Chain CRFs, the type of patterns over output sequences that can be learned by the model depend directly on the modelâ...
Edward Loper
128
Voted
BMCBI
2006
111views more  BMCBI 2006»
15 years 2 months ago
Tools for integrated sequence-structure analysis with UCSF Chimera
Background: Comparing related structures and viewing the structures in the context of sequence alignments are important tasks in protein structure-function research. While many pr...
Elaine C. Meng, Eric F. Pettersen, Gregory S. Couc...