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IDEAS
2003
IEEE
100views Database» more  IDEAS 2003»
14 years 2 months ago
Querying XML Data by the Nested Relational Sequence Database System
In this concise paper, we present the Nested Relational Sequence Model (NRSM), which is an extension of the Nested Relational Data Model in order to handle XML data. We also intro...
Ho Lam Lau, Wilfred Ng
BMCBI
2010
163views more  BMCBI 2010»
13 years 9 months ago
DraGnET: Software for storing, managing and analyzing annotated draft genome sequence data
Background: New "next generation" DNA sequencing technologies offer individual researchers the ability to rapidly generate large amounts of genome sequence data at drama...
Stacy Duncan, Ruchita Sirkanungo, Leslie Miller, G...
BIBM
2010
IEEE
139views Bioinformatics» more  BIBM 2010»
13 years 6 months ago
Scalable, updatable predictive models for sequence data
The emergence of data rich domains has led to an exponential growth in the size and number of data repositories, offering exciting opportunities to learn from the data using machin...
Neeraj Koul, Ngot Bui, Vasant Honavar
BMCBI
2006
122views more  BMCBI 2006»
13 years 9 months ago
PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data
Background: We recently developed the Paired End diTag (PET) strategy for efficient characterization of mammalian transcriptomes and genomes. The paired end nature of short PET se...
Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Prami...
ISMB
1996
13 years 10 months ago
Improving the Quality of Automatic DNA Sequence Assembly Using Fluorescent Trace-Data Classifications
Virtually all large-scale sequencing projects use automatic sequence-assembly programs to aid in the determination of DNA sequences. The computer-generated assemblies require subs...
Carolyn F. Allex, Schuyler F. Baldwin, Jude W. Sha...