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IDEAS
1997
IEEE
237views Database» more  IDEAS 1997»
14 years 2 months ago
Sequence Comparison Using a Relational Database Approach
A variety of heterogenous data sources is available in the field of molecular biology. Our focus lies on the biological sequence data, i. e. data maintained in collections like EM...
André Bergholz, Stephan Heymann, Jörg ...
JCDL
2004
ACM
103views Education» more  JCDL 2004»
14 years 3 months ago
Integration of biomedical text and sequence OAI repositories
Archived biomedical literature and sequence data are growing rapidly. The Open Archives Initiative's Protocol for Metadata Harvesting (OAI-PMH) [1] provides a convenient way ...
Yueyu Fu, Javed Mostafa
PADL
2009
Springer
14 years 10 months ago
Using Bloom Filters for Large Scale Gene Sequence Analysis in Haskell
Analysis of biological data often involves large data sets and computationally expensive algorithms. Databases of biological data continue to grow, leading to an increasing demand ...
Ketil Malde, Bryan O'Sullivan
ICML
2009
IEEE
14 years 5 months ago
Learning linear dynamical systems without sequence information
Virtually all methods of learning dynamic systems from data start from the same basic assumption: that the learning algorithm will be provided with a sequence, or trajectory, of d...
Tzu-Kuo Huang, Jeff Schneider
COLING
2008
13 years 11 months ago
Homotopy-Based Semi-Supervised Hidden Markov Models for Sequence Labeling
This paper explores the use of the homotopy method for training a semi-supervised Hidden Markov Model (HMM) used for sequence labeling. We provide a novel polynomial-time algorith...
Gholamreza Haffari, Anoop Sarkar