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ISBI
2006
IEEE
14 years 11 months ago
Nonuniform temporal alignment of slice sequences for four-dimensional imaging of cyclically deforming embryonic structures
The temporal alignment of nongated slice-sequences acquired at different axial positions in the living embryonic zebrafish heart permits the reconstruction of dynamic, three-dimen...
Michael Liebling, Julien Vermot, Arian S. Forouhar...
VLDB
2002
ACM
83views Database» more  VLDB 2002»
13 years 9 months ago
Searching on the Secondary Structure of Protein Sequences
In spite of the many decades of progress in database research, surprisingly scientists in the life sciences community still struggle with inefficient and awkward tools for queryin...
Laurie Hammel, Jignesh M. Patel
ICDM
2006
IEEE
135views Data Mining» more  ICDM 2006»
14 years 4 months ago
Discovering Frequent Poly-Regions in DNA Sequences
The problem of discovering arrangements of regions of high occurrence of one or more items of a given alphabet in a sequence, is studied, and two efficient approaches are propose...
Panagiotis Papapetrou, Gary Benson, George Kollios
BMCBI
2010
133views more  BMCBI 2010»
13 years 7 months ago
Initial steps towards a production platform for DNA sequence analysis on the grid
Background: Bioinformatics is confronted with a new data explosion due to the availability of high throughput DNA sequencers. Data storage and analysis becomes a problem on local ...
Angela C. M. Luyf, Barbera D. C. van Schaik, Miche...
DASFAA
2005
IEEE
136views Database» more  DASFAA 2005»
14 years 3 months ago
Indexing DNA Sequences Using q-Grams
We have observed in recent years a growing interest in similarity search on large collections of biological sequences. Contributing to the interest, this paper presents a method fo...
Xia Cao, Shuai Cheng Li, Anthony K. H. Tung