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JCB
2002
116views more  JCB 2002»
13 years 7 months ago
A Novel Approach to Remote Homology Detection: Jumping Alignments
We describe a new algorithm for protein classi cation and the detection of remote homologs. The rationale is to exploit both vertical and horizontal information of a multiple alig...
Rainer Spang, Marc Rehmsmeier, Jens Stoye
IPMI
2005
Springer
14 years 8 months ago
A Genetic Algorithm for the Topology Correction of Cortical Surfaces
We propose a technique to accurately correct the spherical topology of cortical surfaces. We construct a mapping from the original surface onto the sphere to detect topological def...
Florent Ségonne, W. Eric L. Grimson, Bruce ...
IWPEC
2009
Springer
14 years 2 months ago
Bounded-Degree Techniques Accelerate Some Parameterized Graph Algorithms
Many parameterized algorithms for NP-hard graph problems are search tree algorithms with sophisticated local branching rules. But it has also been noticed that the global structur...
Peter Damaschke
HIPC
2007
Springer
14 years 1 months ago
Accelerating Large Graph Algorithms on the GPU Using CUDA
Abstract. Large graphs involving millions of vertices are common in many practical applications and are challenging to process. Practical-time implementations using high-end comput...
Pawan Harish, P. J. Narayanan
SLS
2007
Springer
117views Algorithms» more  SLS 2007»
14 years 1 months ago
An Algorithm Portfolio for the Sub-graph Isomorphism Problem
Abstract. This work presents an algorithm for the sub-graph isomorphism problem based on a new pruning technique for directed graphs. During the tree search, the method checks if a...
Roberto Battiti, Franco Mascia