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» On Clusterings - Good, Bad and Spectral
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BMCBI
2010
136views more  BMCBI 2010»
13 years 7 months ago
SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale
Background: An important problem in genomics is the automatic inference of groups of homologous proteins from pairwise sequence similarities. Several approaches have been proposed...
Tamás Nepusz, Rajkumar Sasidharan, Alberto ...
DILS
2008
Springer
13 years 9 months ago
Semi Supervised Spectral Clustering for Regulatory Module Discovery
We propose a novel semi-supervised clustering method for the task of gene regulatory module discovery. The technique uses data on dna binding as prior knowledge to guide the proces...
Alok Mishra, Duncan Gillies
BIRTHDAY
2010
Springer
13 years 10 months ago
Clustering the Normalized Compression Distance for Influenza Virus Data
The present paper analyzes the usefulness of the normalized compression distance for the problem to cluster the hemagglutinin (HA) sequences of influenza virus data for the HA gene...
Kimihito Ito, Thomas Zeugmann, Yu Zhu
UAI
2003
13 years 8 months ago
Learning Generative Models of Similarity Matrices
Recently, spectral clustering (a.k.a. normalized graph cut) techniques have become popular for their potential ability at finding irregularlyshaped clusters in data. The input to...
Rómer Rosales, Brendan J. Frey
NIPS
2008
13 years 8 months ago
Spectral Clustering with Perturbed Data
Spectral clustering is useful for a wide-ranging set of applications in areas such as biological data analysis, image processing and data mining. However, the computational and/or...
Ling Huang, Donghui Yan, Michael I. Jordan, Nina T...