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BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
14 years 2 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang
ICCCN
2007
IEEE
14 years 1 months ago
Infrastructure for Cross-Layer Designs Interaction
Abstract—The current system design of mobile ad hoc networks (MANET), derived from their traditional fixed counterparts, cannot fully meet the requirements inherent to the dynam...
Zhijiang Chang, Georgi Gaydadjiev, Stamatis Vassil...
BMCBI
2008
211views more  BMCBI 2008»
13 years 7 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
DAC
2005
ACM
14 years 8 months ago
Hardware speech recognition for user interfaces in low cost, low power devices
We propose a system architecture for real-time hardware speech recognition on low-cost, power-constrained devices. The system is intended to support real-time speech-based user in...
Sergiu Nedevschi, Rabin K. Patra, Eric A. Brewer
PLDI
1995
ACM
13 years 11 months ago
Selective Specialization for Object-Oriented Languages
Dynamic dispatching is a major source of run-time overhead in object-oriented languages, due both to the direct cost of method lookup and to the indirect effect of preventing othe...
Jeffrey Dean, Craig Chambers, David Grove