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» On Complexity of Easy Predictable Sequences
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BMCBI
2008
93views more  BMCBI 2008»
13 years 7 months ago
VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens
Background: Prediction of bacterial virulent protein sequences has implications for identification and characterization of novel virulence-associated factors, finding novel drug/v...
Aarti Garg, Dinesh Gupta
BMCBI
2010
72views more  BMCBI 2010»
13 years 7 months ago
Potentials 'R'Us web-server for protein energy estimations with coarse-grained knowledge-based potentials
Background: Knowledge-based potentials have been widely used in the last 20 years for fold recognition, protein structure prediction from amino acid sequence, ligand binding, prot...
Yaping Feng, Andrzej Kloczkowski, Robert L. Jernig...
ICML
2005
IEEE
14 years 8 months ago
Predicting protein folds with structural repeats using a chain graph model
Protein fold recognition is a key step towards inferring the tertiary structures from amino-acid sequences. Complex folds such as those consisting of interacting structural repeat...
Yan Liu, Eric P. Xing, Jaime G. Carbonell
IJDMB
2010
216views more  IJDMB 2010»
13 years 6 months ago
Struct-NB: predicting protein-RNA binding sites using structural features
: We explore whether protein-RNA interfaces differ from non-interfaces in terms of their structural features and whether structural features vary according to the type of the bound...
Fadi Towfic, Cornelia Caragea, David C. Gemperline...
BMCBI
2010
142views more  BMCBI 2010»
13 years 7 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...