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» On Compressibility of Protein Sequences
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ISMB
1997
13 years 11 months ago
SEALS: A System for Easy Analysis of Lots of Sequences
We present a system of programs designed to facilitate sequence analysis projects involving large amounts of data. SEALS (System for Easy Analysis of Lots of Sequences) is a logic...
D. Roland Walker, Eugene V. Koonin
COMAD
2008
13 years 11 months ago
REBMEC: Repeat Based Maximum Entropy Classifier for Biological Sequences
An important problem in biological data analysis is to predict the family of a newly discovered sequence like a protein or DNA sequence, using the collection of available sequence...
Pratibha Rani, Vikram Pudi
SDM
2009
SIAM
170views Data Mining» more  SDM 2009»
14 years 7 months ago
Optimal Distance Bounds on Time-Series Data.
Most data mining operations include an integral search component at their core. For example, the performance of similarity search or classification based on Nearest Neighbors is ...
Michail Vlachos, Philip S. Yu, Suleyman S. Kozat
AAAI
2004
13 years 11 months ago
PROBCONS: Probabilistic Consistency-Based Multiple Alignment of Amino Acid Sequences
Obtaining an accurate multiple alignment of protein sequences is a difficult computational problem for which many heuristic techniques sacrifice optimality to achieve reasonable r...
Chuong B. Do, Michael Brudno, Serafim Batzoglou
PAMI
1998
87views more  PAMI 1998»
13 years 10 months ago
Learning Local Languages and Their Application to DNA Sequence Analysis
—This paper concerns an efficient algorithm for learning in the limit a special type of regular languages called strictly locally testable languages from positive data, and its a...
Takashi Yokomori, Satoshi Kobayashi