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» On Compressibility of Protein Sequences
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BMCBI
2008
130views more  BMCBI 2008»
13 years 10 months ago
An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories
Background: Understanding how proteins fold is essential to our quest in discovering how life works at the molecular level. Current computation power enables researchers to produc...
Hong Sun, Hakan Ferhatosmanoglu, Motonori Ota, Yus...
LION
2009
Springer
135views Optimization» more  LION 2009»
14 years 4 months ago
Neural Network Pairwise Interaction Fields for Protein Model Quality Assessment
We present a new knowledge-based Model Quality Assessment Program (MQAP) at the residue level which evaluates single protein structure models. We use a tree representation of the ...
Alberto J. M. Martin, Alessandro Vullo, Gianluca P...
GCB
2004
Springer
139views Biometrics» more  GCB 2004»
14 years 3 months ago
Graph Alignments: A New Concept to Detect Conserved Regions in Protein Active Sites
: We introduce the novel concept of graph alignment, a generalization of graph isomorphism that is motivated by the commonly used multiple sequence alignments. Graph alignments and...
Nils Weskamp, Eyke Hüllermeier, Daniel Kuhn, ...
ICANN
2003
Springer
14 years 3 months ago
Optimizing Property Codes in Protein Data Reveals Structural Characteristics
We search for assignments of numbers to the amino acids (property codes) that maximize the autocorrelation function signal in given protein sequence data by an iterative method. Ou...
Olaf Weiss, Andreas Ziehe, Hanspeter Herzel
GECCO
2009
Springer
190views Optimization» more  GECCO 2009»
14 years 2 months ago
Genetic programming for protein related text classification
Since the genomics revolution, bioinformatics has never been so popular. Many researchers have investigated with great success the use of evolutionary computation in bioinformatic...
Marc Segond, Cyril Fonlupt, Denis Robilliard